rs27423089 SNP Detail

Summary

• ID
  rs27423089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AACAGTCTGC AACTCCAGTG
  Y
  GAAGGGATTC AGTGCCCTCT TCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646613	NES09015958	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		C	T	T	C		T
ss320480949	CHEV_2_120801708	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423089					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646613	NES09015958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	970 bp proximal
Gm55820	predicted gene, 55820	1679 bp downstream
Rr563749	regulatory region 563749	9 bp proximal
Rr563750	regulatory region 563750	232 bp proximal
Rr563751	regulatory region 563751	543 bp proximal
Rr563752	regulatory region 563752	555 bp proximal
Rr563753	regulatory region 563753	1065 bp proximal
Rr563754	regulatory region 563754	1071 bp proximal
Rr563755	regulatory region 563755	1137 bp proximal
Rr563756	regulatory region 563756	1519 bp proximal
Tmem62	transmembrane protein 62	1045 bp upstream
Tssr19722	transcription start site region 19722	1109 bp upstream
Tssr19723	transcription start site region 19723	1176 bp upstream
Tssr19724	transcription start site region 19724	1276 bp upstream