rs27423088 SNP Detail

Summary

• ID
  rs27423088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120807875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC TACGGCCTGG CTGGGCCGAC
  Y
  ACGCCGCTGC CGAAGCCCAG AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646612	NES09015940	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C		T	C	C	C		C
ss45333144	mCV22579044	ABI	CRAMUS_MOUSE	f	SNP		C					T	C
ss147374615	ENSMUSSNP2700242	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320480956	CHEV_2_120803130	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423088					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646612	NES09015940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120807875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			within coordinates
Gm55820	predicted gene, 55820			257 bp downstream
Rr397244	regulatory region 397244			1183 bp upstream
Rr563749	regulatory region 563749			1392 bp distal
Rr563750	regulatory region 563750			1169 bp distal
Rr563751	regulatory region 563751			858 bp distal
Rr563752	regulatory region 563752			367 bp distal
Rr563753	regulatory region 563753			336 bp distal
Rr563754	regulatory region 563754			within coordinates
Rr563755	regulatory region 563755			264 bp distal
Rr563756	regulatory region 563756			97 bp proximal
Rr563757	regulatory region 563757			1356 bp proximal
Tmem62	transmembrane protein 62			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			287 bp downstream
Tssr19723	transcription start site region 19723			209 bp downstream
Tssr19724	transcription start site region 19724			86 bp downstream