rs27423086 SNP Detail

Summary

• ID
  rs27423086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120808577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGTAGG AATAAGGCTT GTGATGCTTA CGACCAGATG
  TTGTCTGCCA TATTTGTGTT GTGTGTGTGT GTGTTTATGT GTGGGTGTGT GCGCACGTGC
  R
  CGTGTATTGA TGGTGATGAT GTCCTGATGA ATTTGAATAT TAGGGGGTGC CCTATAACCG
  GGAATCAAAA GCTCTCCTTT GCTGACTTAT ATTTTTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646610	NES09015942	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G	G	A	G	G		G	G	G	G		G
ss147374619	ENSMUSSNP6781789	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320480957	CHEV_2_120803832	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423086					SNP	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646610	NES09015942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120808577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			215 bp distal
Gm55820	predicted gene, 55820			369 bp upstream
Rr397244	regulatory region 397244			481 bp upstream
Rr563750	regulatory region 563750			1871 bp distal
Rr563751	regulatory region 563751			1560 bp distal
Rr563752	regulatory region 563752			1069 bp distal
Rr563753	regulatory region 563753			1038 bp distal
Rr563754	regulatory region 563754			553 bp distal
Rr563755	regulatory region 563755			966 bp distal
Rr563756	regulatory region 563756			584 bp distal
Rr563757	regulatory region 563757			654 bp proximal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			989 bp downstream
Tssr19723	transcription start site region 19723			911 bp downstream
Tssr19724	transcription start site region 19724			788 bp downstream