rs27423085 SNP Detail

Summary

• ID
  rs27423085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120808666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGCACGTG CGCGTGTATT GATGGTGATG ATGTCCTGAT
  GAATTTGAAT ATTAGGGGGT GCCCTATAAC CGGGAATCAA AAGCTCTCCT TTGCTGACTT
  W
  TATTTTTCTG TACAAGGAGG TTATGTTTTC AGTTGTTTGA GGACTCTTCA AACCTGTGCA
  CGTGTGAGCC CAAAGGTTGG GTAGGAAAAG CTCCAAAGAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37646609	NES09015943	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	T	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27423085					SNP	T	A	T	A	T	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646609	NES09015943	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120808666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			304 bp distal
Gm55820	predicted gene, 55820			458 bp upstream
Rr397244	regulatory region 397244			392 bp upstream
Rr563750	regulatory region 563750			1960 bp distal
Rr563751	regulatory region 563751			1649 bp distal
Rr563752	regulatory region 563752			1158 bp distal
Rr563753	regulatory region 563753			1127 bp distal
Rr563754	regulatory region 563754			642 bp distal
Rr563755	regulatory region 563755			1055 bp distal
Rr563756	regulatory region 563756			673 bp distal
Rr563757	regulatory region 563757			565 bp proximal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			1078 bp downstream
Tssr19723	transcription start site region 19723			1000 bp downstream
Tssr19724	transcription start site region 19724			877 bp downstream