rs27423081 SNP Detail

Summary

• ID
  rs27423081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120809868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA AATTTGGACA TAGTGAAGGC
  Y
  AAATCTCTTA TGTGCAGCTA TAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646605	NES09027961	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T		C		T	T	C		T
ss45377370	mCV22579228	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss147374623	ENSMUSSNP4045704	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T					C
ss320480962	CHEV_2_120805123	CHEVERUD	SCREENING_POP	f	SNP													C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423081					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646605	NES09027961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120809868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			1506 bp distal
Gm55820	predicted gene, 55820			1660 bp upstream
Rr397244	regulatory region 397244			509 bp downstream
Rr563754	regulatory region 563754			1844 bp distal
Rr563756	regulatory region 563756			1875 bp distal
Rr563757	regulatory region 563757			616 bp distal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant