rs27414967 SNP Detail

Summary

• ID
  rs27414967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCTGGG CACCAAAAAA AAAAAAAGAA AAAAAGAAAA
  AAAAAAACCT CCTGGAGGAA ACATTCGGTG GGGTGAGGGA GCAGCATGGC CAGGGGTTCC
  Y
  GACACAGGGC CTTGTGTGTT GAAAGCAGGG ATGCTTCTTA TTCCGTTTCT CTAAAATCAT
  CATTCCGTGT GCCACTGTAA TAGTGTGGGA CATGGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622587	NES08997378	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414967					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622587	NES08997378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086366 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1930 bp upstream
Rr373844	regulatory region 373844	1393 bp downstream
Rr373845	regulatory region 373845	1496 bp upstream
Rr564888	regulatory region 564888	1595 bp distal
Rr564889	regulatory region 564889	850 bp distal
Rr564890	regulatory region 564890	230 bp distal
Rr564891	regulatory region 564891	192 bp proximal
Rr564892	regulatory region 564892	207 bp proximal
Rr564893	regulatory region 564893	1063 bp proximal
Tssr20109	transcription start site region 20109	1911 bp upstream