rs27414966 SNP Detail

Summary

• ID
  rs27414966
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCG TTTCTCTAAA ATCATCATTC
  B
  GTGTGCCACT GTAATAGTGT GGGAC                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37622586	NES08997379	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G	G	G		C	G	C		G
ss320504478	CHEV_2_129070248	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27414966					SNP	G	C	G	G	G	G	G	G	C	C	G	C	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622586	NES08997379	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086432 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1864 bp upstream
Rr373844	regulatory region 373844	1459 bp downstream
Rr373845	regulatory region 373845	1430 bp upstream
Rr564888	regulatory region 564888	1661 bp distal
Rr564889	regulatory region 564889	916 bp distal
Rr564890	regulatory region 564890	296 bp distal
Rr564891	regulatory region 564891	126 bp proximal
Rr564892	regulatory region 564892	141 bp proximal
Rr564893	regulatory region 564893	997 bp proximal
Tssr20109	transcription start site region 20109	1845 bp upstream