rs27414964 SNP Detail

Summary

• ID
  rs27414964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTACATA TTGTTAACCA
  CTGAGCCGTC TCTCCGGCAC CTCTTGTAAC ACTTCTGTTT GGAAGTCCTT CTTTTAGCCT
  CTTGGCTGCT CTCTAAGAGT CCTGGTTCTC TTTCTTGGCG GAGGCTCCAG CAAGGGAAGC
  TTTTCCACGG AGCTGCGTCC CTTGACCCCT TACCCCGCCC AGAGTCCCAC TGCTACCAAT
  R
  ACATCTGAGA CTTCCACTTG GCTGCTCTGC AGGGTTCGTC CCTGCTCTGG GGCTCGGCTC
  AGCATTTCTC CAGTTCTTCT CCTGGCTTCC TGCCTGATCC CCCAGAGCTT CCTCTGTGGG
  CTTCTGCTTT GACTCCACGC CTCCCCGTTA ATCCCAGGCT TCTCCATCCT CAGCTCTCGG
  ACCTCCTCTC TTCATTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622584	NES08997348	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414964					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622584	NES08997348	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086869 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1427 bp upstream
Rr373844	regulatory region 373844	1896 bp downstream
Rr373845	regulatory region 373845	993 bp upstream
Rr564889	regulatory region 564889	1353 bp distal
Rr564890	regulatory region 564890	733 bp distal
Rr564891	regulatory region 564891	290 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	560 bp proximal
Tssr20109	transcription start site region 20109	1408 bp upstream