rs27414963 SNP Detail

Summary

• ID
  rs27414963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129087020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT GACTCCACGC CTCCCCGTTA
  W
  TCCCAGGCTT CTCCATCCTC AGCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37622583	NES08997349	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T			T	T	T		A
ss147584305	ENSMUSSNP4606844	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			T
ss320504482	CHEV_2_129070836	CHEVERUD	SCREENING_POP	f	SNP						A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27414963					SNP	T	A	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622583	NES08997349	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129087020 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1276 bp upstream
Rr373845	regulatory region 373845	842 bp upstream
Rr564889	regulatory region 564889	1504 bp distal
Rr564890	regulatory region 564890	884 bp distal
Rr564891	regulatory region 564891	441 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	409 bp proximal
Tssr20109	transcription start site region 20109	1257 bp upstream