rs27414962 SNP Detail

Summary

• ID
  rs27414962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129087763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACTCAAA GTAGAAGAGC CGCTGAGCGA GACTGCAGGA
  GCCTGCCTGA TGAGGCCCCT GGATGGGCAG CCAGCCAGGA ACTAATTTGA CTAATCAGGA
  Y
  GTGGAGAGTC CAGAGCAGGA AGTGTCTGGA ATGCTAGAGA AGGTGAGCAG GTGACAGAAC
  ACCCCAGCCA CCCCACCCCA CCCAGTGACA CTGAAATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622582	NES08997320	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27414962					SNP	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622582	NES08997320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129087763 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	533 bp upstream
Rr373845	regulatory region 373845	99 bp upstream
Rr564890	regulatory region 564890	1627 bp distal
Rr564891	regulatory region 564891	1184 bp distal
Rr564892	regulatory region 564892	667 bp distal
Rr564893	regulatory region 564893	within coordinates
Rr564894	regulatory region 564894	1624 bp proximal
Tssr20109	transcription start site region 20109	514 bp upstream