rs27400093 SNP Detail

Summary

• ID
  rs27400093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153504574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTGTAA ACCAGGGTGG
  CCTCCACCAA CCCCTTGGCT CAGGTCTTCC TGTATGTGTT CTGAATAAGT TGAGAGGTGT
  CTAAAAGGCA GCATTAGTCT CATTTCTGTA ACGTGCTGAT GGTCTGGGAT TTATCTTTTT
  TAATACACGG GATTAGCAGA GGTGACATTT CACTAGACAG AAACTAGGTG ATTATAGGAT
  R
  TACTTTGGGG ACTACATCAA TATAATGATG CTTCTGTCCC ATGGCCTTTT TTCCTCTAGG
  ACATGACAGG AGATGGAGAC AGAGATGATG AAGTAGATGA TGGGAATGGC TCTGATATTC
  TAATGCCAAA GCTCACCCGT GAGACCAAGG ACACCAGGAC GCGCTCTGAA AGCCCGGCTG
  TAAGTCCTAC TGCTTATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss37559323	NES08917840	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	A		G	G	A		G	G
ss45260626	mCV23543919	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss148000157	ENSMUSSNP4862216	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs27400093					SNP	G	G	A	G	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559323	NES08917840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153504574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567717	regulatory region 567717			1681 bp distal
Rr567718	regulatory region 567718			1257 bp proximal