rs27400092 SNP Detail

Summary

• ID
  rs27400092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153504655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGGCAG CATTAGTCTC
  ATTTCTGTAA CGTGCTGATG GTCTGGGATT TATCTTTTTT AATACACGGG ATTAGCAGAG
  GTGACATTTC ACTAGACAGA AACTAGGTGA TTATAGGATG TACTTTGGGG ACTACATCAA
  TATAATGATG CTTCTGTCCC ATGGCCTTTT TTCCTCTAGG ACATGACAGG AGATGGAGAC
  R
  GAGATGATGA AGTAGATGAT GGGAATGGCT CTGATATTCT AATGCCAAAG CTCACCCGTG
  AGACCAAGGA CACCAGGACG CGCTCTGAAA GCCCGGCTGT AAGTCCTACT GCTTATCAGG
  CACCTCTCAC CATCCTTGGG CCTGCATAAA AAAATGAGAG GCTGAGACAC TGTTTAATCA
  GAATTTGTTT TCCCGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss37559322	NES08917841	PERLEGEN	MM_PANEL2	f	SNP	A			G		A	A		A	A
ss45327699	mCV23544189	ABI	CRAMUS_MOUSE	f	SNP		A	G		A	A
ss148000161	ENSMUSSNP7026937	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs27400092					SNP	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559322	NES08917841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153504655 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr567717	regulatory region 567717			1762 bp distal
Rr567718	regulatory region 567718			1176 bp proximal