rs27400091 SNP Detail

Summary

• ID
  rs27400091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153504669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCATTT CTGTAACGTG
  CTGATGGTCT GGGATTTATC TTTTTTAATA CACGGGATTA GCAGAGGTGA CATTTCACTA
  GACAGAAACT AGGTGATTAT AGGATGTACT TTGGGGACTA CATCAATATA ATGATGCTTC
  TGTCCCATGG CCTTTTTTCC TCTAGGACAT GACAGGAGAT GGAGACAGAG ATGATGAAGT
  R
  GATGATGGGA ATGGCTCTGA TATTCTAATG CCAAAGCTCA CCCGTGAGAC CAAGGACACC
  AGGACGCGCT CTGAAAGCCC GGCTGTAAGT CCTACTGCTT ATCAGGCACC TCTCACCATC
  CTTGGGCCTG CATAAAAAAA TGAGAGGCTG AGACACTGTT TAATCAGAAT TTGTTTTCCC
  GGCACATTGG ATTTTATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss37559321	NES08917842	PERLEGEN	MM_PANEL2	f	SNP	A			G		A	A	G		A	G
ss45314500	mCV23544190	ABI	CRAMUS_MOUSE	f	SNP		A	G		A	A
ss148000168	ENSMUSSNP4495119	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs27400091					SNP	A	A	G	G	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559321	NES08917842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153504669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr567717	regulatory region 567717			1776 bp distal
Rr567718	regulatory region 567718			1162 bp proximal