rs27400089 SNP Detail

Summary

• ID
  rs27400089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153504849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACAGAG ATGATGAAGT
  AGATGATGGG AATGGCTCTG ATATTCTAAT GCCAAAGCTC ACCCGTGAGA CCAAGGACAC
  CAGGACGCGC TCTGAAAGCC CGGCTGTAAG TCCTACTGCT TATCAGGCAC CTCTCACCAT
  CCTTGGGCCT GCATAAAAAA ATGAGAGGCT GAGACACTGT TTAATCAGAA TTTGTTTTCC
  Y
  GGCACATTGG ATTTTATGTG TGTTGCGTAG GTCAGTGGAC AGTTTACAAG AGCTAGGTTT
  TCACCTTAAA AGCATGTAGA TTCCAGGGAC CAGACTCAAG ATTAGCAGGC TTTGGCAAGT
  CTCCTAACCC ACTGAGCCCC TTGGTTAAGT GTTAATGTCC TTCAGCTACT ACGGGTAATT
  CAGATTATAA CCTGAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559319	NES08917844	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27400089					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559319	NES08917844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153504849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567717	regulatory region 567717			1956 bp distal
Rr567718	regulatory region 567718			982 bp proximal