rs27400088 SNP Detail

Summary

• ID
  rs27400088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153505022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGTTTA ATCAGAATTT
  GTTTTCCCGG CACATTGGAT TTTATGTGTG TTGCGTAGGT CAGTGGACAG TTTACAAGAG
  CTAGGTTTTC ACCTTAAAAG CATGTAGATT CCAGGGACCA GACTCAAGAT TAGCAGGCTT
  TGGCAAGTCT CCTAACCCAC TGAGCCCCTT GGTTAAGTGT TAATGTCCTT CAGCTACTAC
  R
  GGTAATTCAG ATTATAACCT GAGCCTCAGG GTAAAATGAC ATTTGACAGA GCAAAGAGCA
  TATGAGCACA GCCGCTTGAC AGTCACTTGA TGGTGACAAC AAGAACTTGA GCAAAAACCA
  CTTAATGTTT GGATATCTTC AACATTTCCT AACTACAATC TTTTTGAGGA GGACTTCATA
  TTCATTACCC ATTCCTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559318	NES08917831	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	A	G	G	G	G	G	G	G	G
ss45330524	mCV23544203	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148000187	ENSMUSSNP2816100	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27400088					SNP	G	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559318	NES08917831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153505022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			809 bp proximal