rs27400085 SNP Detail

Summary

• ID
  rs27400085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153505354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATCTTCA ACATTTCCTA
  ACTACAATCT TTTTGAGGAG GACTTCATAT TCATTACCCA TTCCTGCTAA AACAACAGGG
  AACTGAGTTA CGGTTGGTCA CCAGTGTTCT CACCCTCACC ATGTGACCAG GTCTAAGTTA
  GATTCCTGCT GATGACAGGG AATGAGCTTT AAGCCTGGGT GTGTGGAAAT CCTGGAACAC
  Y
  AGGGCCTACA AGGTGGAGGC AGGAGGATCA GTGTTGCGCT GAGACAGTGG TGACCTTAGC
  TCACCTGTGT CAATCCTGAG CTGCTTCTGG CTGCACCATC ACACCTGGGG CGAAACTCAA
  ACCCAGAGTT TACATGAAAC AAGCATTCTA CCAGTTTAGT TATTCACAAC TCTCAAATGA
  TTTGAACTTT GGAAAGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37559315	NES08917835	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C	C	C	C	C	T	C	C
ss45241971	mCV23544215	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						C
ss148000206	ENSMUSSNP2370213	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27400085					SNP	C	C	T	C	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559315	NES08917835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153505354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			477 bp proximal