rs27400081 SNP Detail

Summary

• ID
  rs27400081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153506539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGAAA AAAGTCTATT
  GAAATGTGAA GTCCCAGCGG GTCAGTGAGC AAGGCAGCTG CAGCAGTGAC GTCTATCACC
  TTCTGTGAAT TCGTGCTTTG CTCATCTTAC ACACTGGAGA CAATTCCAGT GACTTCAACT
  CTTGAGCTGC GGTTGGGTCT CAGGCTGTTT CCTGTCTTTG TGCTGGGATT GCAGGCAGGT
  R
  ACACCCCCAC AGCTGATTAA CTATCAACGT TCCACAGAGT TTGAATAAAT GGCAGCAGCA
  GGCAAGCACA CACCATGTGC TGAGTAAACT GTGCTTTTCT TCTCTGCTCT CTTCCAGTGC
  CTTCTTGAGT AAGCCGGTAT CAAGGCCTGT GCTTCTCCTG GAATAATAAT ACTTGGTTTA
  AGTCAGTGAT TGAGACCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37559311	NES08917823	PERLEGEN	MM_PANEL2	f	SNP	G			A		G	G	A	G	G
ss45310521	mCV23544226	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27400081					SNP	G	G	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559311	NES08917823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153506539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			687 bp distal