rs27400080 SNP Detail

Summary

• ID
  rs27400080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153506618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGTGAA TTCGTGCTTT
  GCTCATCTTA CACACTGGAG ACAATTCCAG TGACTTCAAC TCTTGAGCTG CGGTTGGGTC
  TCAGGCTGTT TCCTGTCTTT GTGCTGGGAT TGCAGGCAGG TGACACCCCC ACAGCTGATT
  AACTATCAAC GTTCCACAGA GTTTGAATAA ATGGCAGCAG CAGGCAAGCA CACACCATGT
  R
  CTGAGTAAAC TGTGCTTTTC TTCTCTGCTC TCTTCCAGTG CCTTCTTGAG TAAGCCGGTA
  TCAAGGCCTG TGCTTCTCCT GGAATAATAA TACTTGGTTT AAGTCAGTGA TTGAGACCTG
  TGGGTCTCAG TGCTGTTGGG AGGGGGTTAG AAGACCCTTT CACAGGGTCA CATATCAGAT
  ATGCTCTGTA TCAGTTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559310	NES08917824	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27400080					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559310	NES08917824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153506618 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			766 bp distal