rs27397116 SNP Detail

Summary

• ID
  rs27397116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:94237597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGGAGT GTTAAGCGGC
  GCAGTCGTAC TGTGTAATGC ATGTCACACA TCGAATTAAA AAAATAGCTC GTTATCAAAT
  ACAAAATATC AGCTCATTAC AAGTTATGTA TATGTGATCG GCATACTTTT TCTTCCGAAA
  TTTAGAAAGC GATGTGTCCT TACAGACCAC TTACATCCAG TGTGGCCAGA TTTTTGGGTC
  W
  TACAGCAGCA GCACCACGTG TCTTGTGGAC TTTGGTGGGC AGCTCTAGTC TAAGTTAAAG
  ACCTAGGTGT AGAACCCAGA TAGTGGCATC TCCGGGGAGG GGACTGTATT AAATATGTAA
  GCACTGCGGC TTCCCTTCCC CGAGGGTAGA CTCAGCCATT ATGAGTATGT TTTAAAGAAG
  TCTCAGGTGA TTGATTTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595046	NES09085902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397116					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595046	NES09085902	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94237597 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	within coordinates
Cpgi11962	CpG island 11962	401 bp distal
Rr561373	regulatory region 561373	1091 bp distal
Rr561374	regulatory region 561374	1099 bp distal
Rr561375	regulatory region 561375	754 bp distal
Rr561376	regulatory region 561376	497 bp distal
Rr561377	regulatory region 561377	529 bp distal
Rr561378	regulatory region 561378	within coordinates
Tssr19003	transcription start site region 19003	490 bp downstream
Tssr19004	transcription start site region 19004	444 bp downstream
Tssr25329	transcription start site region 25329	556 bp upstream
Ttc17	tetratricopeptide repeat domain 17	563 bp upstream