rs27384786 SNP Detail

Summary

• ID
  rs27384786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92218277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCCAC CCCATCTTGC
  CTTGCCAAAG GCCTTTCTGC CAACCATCCT CTAGCAGGCA GGCAGGGTGG GAAGTTAGCA
  CCCTCCCCAC AGGCCTGCTG GCTTGGAGAC AACCCTCAAG AGATGCAGTG GTGCTGGCCA
  GTGTGGGTGC TGAGTAGCAG ATGTTGGAGG AAGAAGCACA GCTCCCAGGA GAGCAAGACA
  R
  CAGCCCAGAC ACTGACAGGA GACGTGTTCC CATGCACAAA CCCAACCCTG GTGAAGAACC
  TAGCGACTGA CTCCCTGTCC TCGAGCTCAG AAAGTTGGGG GGTCTAGCAA AGTGGCAAGG
  ACATCCTGGC ACAAGGAAGG GTCTCCCCGG AAGTTGCCTG TGGGCCTGGG TGAGTCATTC
  AAACCATGAC TCCAGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602705	NES09104063	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384786					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602705	NES09104063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92218277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11929	CpG island 11929	897 bp proximal
Gm74778	predicted gene, 74778	1679 bp upstream
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1	Intron
Mir7000	microRNA 7000	486 bp upstream
Rr560905	regulatory region 560905	676 bp distal
Rr560906	regulatory region 560906	1189 bp proximal
Rr560907	regulatory region 560907	1690 bp proximal
Tssr25252	transcription start site region 25252	1080 bp downstream
Tssr25253	transcription start site region 25253	1316 bp downstream