CTGTTCCCAC CCCATCTTGC CTTGCCAAAG GCCTTTCTGC CAACCATCCT CTAGCAGGCA GGCAGGGTGG GAAGTTAGCA CCCTCCCCAC AGGCCTGCTG GCTTGGAGAC AACCCTCAAG AGATGCAGTG GTGCTGGCCA GTGTGGGTGC TGAGTAGCAG ATGTTGGAGG AAGAAGCACA GCTCCCAGGA GAGCAAGACA R CAGCCCAGAC ACTGACAGGA GACGTGTTCC CATGCACAAA CCCAACCCTG GTGAAGAACC TAGCGACTGA CTCCCTGTCC TCGAGCTCAG AAAGTTGGGG GGTCTAGCAA AGTGGCAAGG ACATCCTGGC ACAAGGAAGG GTCTCCCCGG AAGTTGCCTG TGGGCCTGGG TGAGTCATTC AAACCATGAC TCCAGAACAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37602705 | NES09104063 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | A | G |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27384786 | SNP | G | G | G | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37602705 | NES09104063 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:92218277 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11929 | CpG island 11929 | 897 bp proximal | ||||||
Gm74778 | predicted gene, 74778 | 1679 bp upstream | ||||||
Mapk8ip1 | mitogen-activated protein kinase 8 interacting protein 1 | Intron | ||||||
Mir7000 | microRNA 7000 | 486 bp upstream | ||||||
Rr560905 | regulatory region 560905 | 676 bp distal | ||||||
Rr560906 | regulatory region 560906 | 1189 bp proximal | ||||||
Rr560907 | regulatory region 560907 | 1690 bp proximal | ||||||
Tssr25252 | transcription start site region 25252 | 1080 bp downstream | ||||||
Tssr25253 | transcription start site region 25253 | 1316 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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