rs27384785 SNP Detail

Summary

• ID
  rs27384785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92218842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAATG CCATAAGCAA
  CACACACCAT TGATGAGCTG GGCTGCCAGA AGCCATGCCA GAGGATACTG GGAAAGGGAC
  CAACCCCTTC CTTGCAGCCC CTGCGCCATC CATCAGCAGC CCTACCTCCC CAGCTTCTTC
  CCTCCCAGTA TCTCTCCTGA CTAGGCCTGT AAGACAATGG GTCGAGGCAG CCCTCTTTGG
  Y
  ATCCAGCCAC CAGCAAGGGG CCCTAGGTCC CCCAACTCAG CCAAGCAATT CCATCCCCAC
  CCCATCTCTA TTGCTGCCTT CTGGAATGTC CAGCTGCTGA GATGTCCAAC TGGAGACAGA
  CCCTGAATTC CCTTCCCCAC CTTCATCTCA TTTCAGAGGC TCTTTTTCCC CAGGCCCTGC
  TGCTGCCTCA ACCCTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602704	NES09104064	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	C	C	C	C	C	T
ss45277980	mCV23290366	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384785					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602704	NES09104064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92218842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11929	CpG island 11929	332 bp proximal
Gm74778	predicted gene, 74778	1114 bp upstream
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1	Intron
Mir7000	microRNA 7000	1051 bp upstream
Rr560905	regulatory region 560905	1241 bp distal
Rr560906	regulatory region 560906	624 bp proximal
Rr560907	regulatory region 560907	1125 bp proximal
Tssr25252	transcription start site region 25252	515 bp downstream
Tssr25253	transcription start site region 25253	751 bp downstream