ACCCCATCTC TATTGCTGCC TTCTGGAATG TCCAGCTGCT GAGATGTCCA ACTGGAGACA GACCCTGAAT TCCCTTCCCC ACCTTCATCT CATTTCAGAG GCTCTTTTTC CCCAGGCCCT GCTGCTGCCT CAACCCTCCC AGATGCACTA ACCCAAAGAG GACCTAACTG CAGGACCTCA ACTCCTTTGT TAGTTCTCTG M AACTCTCCCT ACACAAATCC CTAGCAATGC AGGCTCCATA CCCAGACAGC TGGATTCAGT CCCTCTCAGG ACAGACTTTG CTGTCCCTCT TCAAGCCCTT CCTCTATCCT TCCCTGCAGA AAGCCTGTCC CTCCCCGGCA TCACCAACAG GCCCGCGCCC CTCCATCTTT CCGGTCCACC CAGGGCACCG CCCCCTCTCT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37602703 | NES09104065 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | A | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs27384784 | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37602703 | NES09104065 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr2:92219101 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11929 | CpG island 11929 | 73 bp proximal | ||||||
Gm74778 | predicted gene, 74778 | 855 bp upstream | ||||||
Mapk8ip1 | mitogen-activated protein kinase 8 interacting protein 1 | Intron | ||||||
Mir7000 | microRNA 7000 | 1310 bp upstream | ||||||
Rr560905 | regulatory region 560905 | 1500 bp distal | ||||||
Rr560906 | regulatory region 560906 | 365 bp proximal | ||||||
Rr560907 | regulatory region 560907 | 866 bp proximal | ||||||
Rr560908 | regulatory region 560908 | 1888 bp proximal | ||||||
Tssr25252 | transcription start site region 25252 | 256 bp downstream | ||||||
Tssr25253 | transcription start site region 25253 | 492 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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