ATGCGTTAAA GCGGCTGAGC CTTTGACTAG ACTCCCACCA GGAGATCACC CTCGTTAGTC AAGTACTACC AGGGGTGGAG GGAGTTCTGG CTAATTGCAG AAGACCTTCT GCAGCCCTAC ATATGGGCAA CAGTGGTTTC AAAGTTCAGA GCAGGTATAG GACCTTAGGG AAGTCATGAC CTAGCTCTAG GACCACTGAT S AAGCCCAGAA GTAGCTTCTG CCTCTATCCT TGCTGGCCTG ATAAGAGAGG GAAGGATTTG ATGTGGGAAC CATAAAGTCA TCTTCCCAGC TTGCTTTCCT TTGCCTAAAA GTTTCTAAAA GTGCTAGGGA TACTGGGAGG GCACCACTAA GACAAATTCC CTCCCCTGGC TCACACCACA GCCACCAAAA GGCCATATCT S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37602701 | NES09104067 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | C | G |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27384782 | SNP | G | G | G | G | G | G | G | G | G | G | G | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37602701 | NES09104067 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr2:92220519 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11929 | CpG island 11929 | 565 bp distal | ||||||
Cpgi11930 | CpG island 11930 | 1930 bp proximal | ||||||
Gm74778 | predicted gene, 74778 | within coordinates | ||||||
Mapk8ip1 | mitogen-activated protein kinase 8 interacting protein 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr560906 | regulatory region 560906 | 553 bp distal | ||||||
Rr560907 | regulatory region 560907 | within coordinates | ||||||
Rr560908 | regulatory region 560908 | 470 bp proximal | ||||||
Rr560909 | regulatory region 560909 | 1458 bp proximal | ||||||
Tssr25252 | transcription start site region 25252 | 1155 bp upstream | ||||||
Tssr25253 | transcription start site region 25253 | 839 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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