About   Help   FAQ
rs27384782 SNP Detail
Summary
  • ID
    rs27384782
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:92220519 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGCGTTAAA GCGGCTGAGC
    CTTTGACTAG ACTCCCACCA GGAGATCACC CTCGTTAGTC AAGTACTACC AGGGGTGGAG
    GGAGTTCTGG CTAATTGCAG AAGACCTTCT GCAGCCCTAC ATATGGGCAA CAGTGGTTTC
    AAAGTTCAGA GCAGGTATAG GACCTTAGGG AAGTCATGAC CTAGCTCTAG GACCACTGAT
    S
    AAGCCCAGAA GTAGCTTCTG CCTCTATCCT TGCTGGCCTG ATAAGAGAGG GAAGGATTTG
    ATGTGGGAAC CATAAAGTCA TCTTCCCAGC TTGCTTTCCT TTGCCTAAAA GTTTCTAAAA
    GTGCTAGGGA TACTGGGAGG GCACCACTAA GACAAATTCC CTCCCCTGGC TCACACCACA
    GCCACCAAAA GGCCATATCT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37602701 NES09104067 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27384782 SNP G G G G G G G G G G G C G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37602701 NES09104067 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:92220519 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11929 CpG island 11929 565 bp distal
Cpgi11930 CpG island 11930 1930 bp proximal
Gm74778 predicted gene, 74778 within coordinates
Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 Intron
Noncoding-Transcript-Variant
Rr560906 regulatory region 560906 553 bp distal
Rr560907 regulatory region 560907 within coordinates
Rr560908 regulatory region 560908 470 bp proximal
Rr560909 regulatory region 560909 1458 bp proximal
Tssr25252 transcription start site region 25252 1155 bp upstream
Tssr25253 transcription start site region 25253 839 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory