rs27384781 SNP Detail

Summary

• ID
  rs27384781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92220787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATAAAG TCATCTTCCC
  AGCTTGCTTT CCTTTGCCTA AAAGTTTCTA AAAGTGCTAG GGATACTGGG AGGGCACCAC
  TAAGACAAAT TCCCTCCCCT GGCTCACACC ACAGCCACCA AAAGGCCATA TCTAGCTCCT
  CAACTGCCTG CTATAGATAA AGTTCTGGCT TCTGATACTG AACCCTGTAC AGTTGCCTTC
  Y
  GTATCCTGCA AGTAAGTCCC TGCTTTGTGT TCTGACGACA GAATGGGGAT CCCCATGTAT
  CCTGGGTACC CTGGCACTCA GATATGAAGA CAGGAGAGAG TCTGTCACTA TGGTAAAACC
  CAGGAGCTCC GAGCAATATC AATACTGGAA CAAGCCCTCT GTGGGGCCAC TGAGAGCCTA
  AAAGGCTGGT GGTGTGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602700	NES09104072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384781					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602700	NES09104072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92220787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74778	predicted gene, 74778			within coordinates
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr560906	regulatory region 560906			821 bp distal
Rr560907	regulatory region 560907			230 bp distal
Rr560908	regulatory region 560908			202 bp proximal
Rr560909	regulatory region 560909			1190 bp proximal
Tssr25252	transcription start site region 25252			1423 bp upstream
Tssr25253	transcription start site region 25253			1107 bp upstream
Tssr25254	transcription start site region 25254			1893 bp downstream
Tssr25255	transcription start site region 25255			1999 bp downstream