rs27384780 SNP Detail

Summary

• ID
  rs27384780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92220912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TCACTATGGT AAAACCCAGG
  R
  GCTCCGAGCA ATATCAATAC TGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37602699	NES09104075	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G		G	A	G	A		G	A	G	G		G
ss45251551	mCV23290356	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss320393563	CHEV_2_92230724	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27384780					SNP	A	G	G	A	A	G	A	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602699	NES09104075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92220912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11929	CpG island 11929			958 bp distal
Cpgi11930	CpG island 11930			1537 bp proximal
Gm74778	predicted gene, 74778			within coordinates
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr560906	regulatory region 560906			946 bp distal
Rr560907	regulatory region 560907			355 bp distal
Rr560908	regulatory region 560908			77 bp proximal
Rr560909	regulatory region 560909			1065 bp proximal
Tssr25252	transcription start site region 25252			1548 bp upstream
Tssr25253	transcription start site region 25253			1232 bp upstream
Tssr25254	transcription start site region 25254			1768 bp downstream
Tssr25255	transcription start site region 25255			1874 bp downstream
Tssr25256	transcription start site region 25256			1930 bp downstream