rs27384779 SNP Detail

Summary

• ID
  rs27384779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92221037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCATGTA TCCTGGGTAC
  CCTGGCACTC AGATATGAAG ACAGGAGAGA GTCTGTCACT ATGGTAAAAC CCAGGAGCTC
  CGAGCAATAT CAATACTGGA ACAAGCCCTC TGTGGGGCCA CTGAGAGCCT AAAAGGCTGG
  TGGTGTGGTC AGGGTGGTGC AGAGGCAGCA GCCACAGGAG CTAGTCCAGC AGCACCCGGG
  Y
  TCCTCTTTCC TGCCCCAAAG CACTGCAGAG TCCACCAGGC TCCACCCTGC AGGCCCTCTG
  CCAAGATGCT CCTGAGAGGC CCTTCTCTTA ACTCTGGCCC TCAAGCCTCC TCCATTCTCT
  CTCCCTGTGA GCAACTGAAG GAGTTGCTTC TGGCTTTAGC ACCAGCAAAA CAATACAAAA
  TATTAAATGA AGATTTCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602698	NES09104078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384779					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602698	NES09104078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92221037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11929	CpG island 11929			1083 bp distal
Cpgi11930	CpG island 11930			1412 bp proximal
Gm74778	predicted gene, 74778			within coordinates
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr560906	regulatory region 560906			1071 bp distal
Rr560907	regulatory region 560907			480 bp distal
Rr560908	regulatory region 560908			within coordinates
Rr560909	regulatory region 560909			940 bp proximal
Tssr25252	transcription start site region 25252			1673 bp upstream
Tssr25253	transcription start site region 25253			1357 bp upstream
Tssr25254	transcription start site region 25254			1643 bp downstream
Tssr25255	transcription start site region 25255			1749 bp downstream
Tssr25256	transcription start site region 25256			1805 bp downstream
Tssr25257	transcription start site region 25257			1942 bp downstream