rs27384778 SNP Detail

Summary

• ID
  rs27384778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92221301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCTCCT GAGAGGCCCT
  TCTCTTAACT CTGGCCCTCA AGCCTCCTCC ATTCTCTCTC CCTGTGAGCA ACTGAAGGAG
  TTGCTTCTGG CTTTAGCACC AGCAAAACAA TACAAAATAT TAAATGAAGA TTTCGGATTG
  AGCACACAAG ATGTGTCAAA CATTATACCG GATGCTTCCT GTATTGTTAT TTCACTTCCT
  S
  GGAGTGCCAC ACACACTCAA AAACTCCTTT GTAAATATTG GGGTCCCCTC ATCTCTGTCC
  CCATCCTCCC AGCCCTTACC CGGAGAGACA GGGTGTCTTT GCACTGCAGG CTGATGCCAC
  ACTCGTCAGT GATCTCCGAA AGGTCTTCAT CCTCAAACTC CTCCAGGCTG ATGTCATGGG
  TGAGCCTGGT GAGGACAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602697	NES09104081	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384778					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602697	NES09104081	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92221301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11929	CpG island 11929			1347 bp distal
Cpgi11930	CpG island 11930			1148 bp proximal
Gm74778	predicted gene, 74778			34 bp downstream
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr560906	regulatory region 560906			1335 bp distal
Rr560907	regulatory region 560907			744 bp distal
Rr560908	regulatory region 560908			116 bp distal
Rr560909	regulatory region 560909			676 bp proximal
Rr560910	regulatory region 560910			1765 bp proximal
Tssr25252	transcription start site region 25252			1937 bp upstream
Tssr25253	transcription start site region 25253			1621 bp upstream
Tssr25254	transcription start site region 25254			1379 bp downstream
Tssr25255	transcription start site region 25255			1485 bp downstream
Tssr25256	transcription start site region 25256			1541 bp downstream
Tssr25257	transcription start site region 25257			1678 bp downstream