rs27384774 SNP Detail

Summary

• ID
  rs27384774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92221818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGTGG TAGGAGAAGG
  ATTTGGGGTT GGAGCCAAAA GGCATTCCAC CTAGGGTGGC GGAGGAGGCA GCTCCAGGTT
  TCTCCAGCAT CGCCGGCTGG GAGTTCTCCA TCCTGCTGCC AACCAGAAGG CAGTCCTAGA
  AGGCCCAACT GTGCAGAGTT TCGGCTCTAT TGGAGAGATG CCTCCGTGGC CAAGGCACTG
  S
  CAAGGCCATG TCAACCCCAA GAGGTACCAG AGTAGGGAAA CTTTTGCACT CCACAGTTAT
  CAAGACCCAA AGAGCCACCA GAAGGGCACA GTAGGTGCCC CTTTCTCTCA TCCACAAAGA
  TATACACCAT TGAGCCATGG TCACAGTGAA GGAGACCTGG GACTCCCTGC TAACATTCTT
  GGTGTCATCT CTTCAACTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602693	NES09104093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384774					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602693	NES09104093	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92221818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11929	CpG island 11929			1864 bp distal
Cpgi11930	CpG island 11930			631 bp proximal
Gm74778	predicted gene, 74778			551 bp downstream
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr560906	regulatory region 560906			1852 bp distal
Rr560907	regulatory region 560907			1261 bp distal
Rr560908	regulatory region 560908			633 bp distal
Rr560909	regulatory region 560909			159 bp proximal
Rr560910	regulatory region 560910			1248 bp proximal
Tssr25254	transcription start site region 25254			862 bp downstream
Tssr25255	transcription start site region 25255			968 bp downstream
Tssr25256	transcription start site region 25256			1024 bp downstream
Tssr25257	transcription start site region 25257			1161 bp downstream