rs27378504 SNP Detail

Summary

• ID
  rs27378504
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103667309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGTGTA GTACACTTAT
  TAATCCACAG GAGATGACTC CTTTCTGATA TTACTCAATG GGACTGCAGC TTGATTTGGT
  GTCTGAGGTT CATTGATGTC AGAGATGGGC ATTTTTTCTC TCTCTCCCCT CCCCCACCTC
  TGCCTCCCCT CTCTCATACA CACATATAGT TTCCATCACG ACATCAACTC CACTATGACA
  M
  GTTGAGCAAC CATCGCTGTT ACCTAGTTTC AGAATACAAG TGCATCATCA TCAATTATCA
  TCCTCATCAT CATTTTAAAA AACGTTAGCA TGTACACCCC CCCGCCCCCC CCCCCCCACA
  CACACTCCAG TGCTTTTCAA GCCATCAGGA CACAGGCACC CTCAAAGCCA TTCATCTTCT
  CGGCCCTTCT GCTGAAGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37571725	NES09062887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27378504					SNP	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571725	NES09062887	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103667309 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	1990 bp upstream
Gm13877	predicted gene 13877	137 bp downstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	1715 bp proximal
Tssr19174	transcription start site region 19174	1956 bp upstream