rs27378501 SNP Detail

Summary

• ID
  rs27378501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103667868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAAGCA GCTCTTTAAG
  TGATAATGCC TCAGATCACC TTTCCCAAAG TCACCCGGAG GGTATTTGTC AAAGCTGAGT
  CAAAATGGTG ACTCAATCCT CCAGCATTGC CCGGACTTCC AGGACCTCTG GTGCTAATGC
  AGCAGAAGCA GGCTTGCCCA GGAAGCCTCT GGGTCTTCCT CAGGATAGGT GGCAGGGTGG
  Y
  CCCTGGAAGC ACTGGAAGTT TCTCTTCATT TGTTTCTTTG TAAGTGTTAG AACCAGCGGC
  TCAGTTTATA GACTGCTGGC TTGGAAAAGA TTCTTGAAAC CATGTGTCCT AACCAGACTG
  GTTAGACAAG GTCATACGAG GAACCCTGAA CCCATTGTGG CTAACTCCAG CCAGCTGGAG
  GCTTGCTGTC TTCAGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571722	NES09062890	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27378501					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571722	NES09062890	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103667868 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	1431 bp upstream
Gm13877	predicted gene 13877	6 bp upstream
Gm56363	predicted gene, 56363	1586 bp upstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	1156 bp proximal
Tssr19174	transcription start site region 19174	1397 bp upstream