rs27378497 SNP Detail

Summary

• ID
  rs27378497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103668217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCATTGT GGCTAACTCC
  AGCCAGCTGG AGGCTTGCTG TCTTCAGAGC CCATGCTGTA GCACTTCTTT GCAAAGAGAC
  CAGCCCTGAG AGGACCAATT GCTTCTAGTT AATTGAATAA TTAGAATTAT CATCCGTTGA
  GACCTCTCAG GAACAAGAAA AATACGCTAC CTTTAGTGAA TATCTTCTCT TTGTAATTCA
  Y
  GCATAAAACA AGTCAACACT TACTAATCAC TTCATGTGTT AAGTACTATG CTGCTACTTG
  GTCCCTTAAT GTTCTTGTGG AGGAGGCTGC TCCATTATAC CCCCATTGTA CAGATAAGAA
  AATAAAGGTT CAGAGAAGTT AACTTGTCCA AGAGCACACA ACTGTTATTA TAGAGCCTGG
  ATCCAATCTC AGCAGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571718	NES09062894	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27378497					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571718	NES09062894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103668217 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	1082 bp upstream
Gm13877	predicted gene 13877	355 bp upstream
Gm56363	predicted gene, 56363	1237 bp upstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	807 bp proximal
Tssr19174	transcription start site region 19174	1048 bp upstream