rs27378493 SNP Detail

Summary

• ID
  rs27378493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103669292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT TCGGGCTTGG GCTTGGGTTC
  Y
  GGCGACATGA CTAAACGCAC CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37571714	NES09062826	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	C	C	T	T		C	T	C		T
ss147139633	ENSMUSSNP5290063	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320442872	CHEV_2_103679104	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378493					SNP	T	T	C	C	C	T	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571714	NES09062826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103669292 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	7 bp upstream
Gm13877	predicted gene 13877	1430 bp upstream
Gm56363	predicted gene, 56363	162 bp upstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	247 bp distal
Tssr19174	transcription start site region 19174	19 bp downstream