rs27378488 SNP Detail

Summary

• ID
  rs27378488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103669485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTCTGG CGACATGACT
  AAACGCACCA AGAAGGTCGG CATCATCGGC AAGTACGGGA CCCGCTAAGG TGCTTCCCTC
  CAGAAAATGG TGAAGAAAAT TGAAATCAGC CAGCGCGCCA AGTACACTTG CTCCTTCTGT
  GGCAAGACCA AGAGGAAGAG ACAAGACGAG CCGTCGGCAT CTGGCACTGT GGTTCCTGCA
  Y
  GAAAACAGTG GCCGCCGGGG CCTGAACCTA CAACACCACC TCTGCAGTCA CAGTGAAGTC
  TGCCATCAGA AGAGAAGGAA CTGAAAGACC AGTAGAAGCC TTGCTGAGAC TTGCCTAGCC
  TGCAATAAGC GGGTTATTTA CGAAAACAAA ACAAAACAAA AAAACCCACA ATGCTTCTAC
  ACTGTAAGTT CCTTGCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571709	NES09062833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378488					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571709	NES09062833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103669485 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	within coordinates
Gm13877	predicted gene 13877	1623 bp upstream
Gm56363	predicted gene, 56363	within coordinates
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	440 bp distal
Tssr19174	transcription start site region 19174	212 bp downstream