rs27377338 SNP Detail

Summary

• ID
  rs27377338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105352010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACAGATG AAGAAGCTGA
  GGTGTGTGGG GTGAAGCCTT GAGTTCAAAG GCAGCTCCTA AACTCCAAGT GATGTTGGAC
  CTCCAAAGCT CCATAGCAGA TGCAGCCTCA CCATCTCTTA TGTCCTTCCA ACTTAAAGCA
  TTAGTATGTC TTGATTTCCT GCAAAAAGCC TCATGACCTC AAGGCCATCA TGGTGAGGGT
  S
  CCTGGCTCGA GCTTGCTCCT AGGGTCACTT CTGTCCCCTG TAAACAGATT ACATGTGAGG
  CAGTGCTCTC TCTCTCTCTC TCTCTAACGC TCTCTCTCTT CCTCCTCCTC CTCCTCTTCC
  TCCTCCTCCT CCTCCTCCTC TTCCTCCTCC TCCTCCTCTT CCTCCTCCAA ATTCGCTTGA
  GGCTGTTTTC TTGAGACATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37616458	NES09072363	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27377338					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616458	NES09072363	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105352010 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	216 bp proximal
Rr562248	regulatory region 562248	1515 bp proximal
Rr562249	regulatory region 562249	1544 bp proximal
Rr562250	regulatory region 562250	1722 bp proximal
Rr562251	regulatory region 562251	1997 bp proximal