rs27377337 SNP Detail

Summary

• ID
  rs27377337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105352181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTAACGC TCTCTCTCTT CCTCCTCCTC
  CTCCTCTTCC TCCTCCTCCT CCTCCTCCTC TTCCTCCTCC TCCTCCTCTT CCTCCTCCAA
  R
  TTCGCTTGAG GCTGTTTTCT TGAGACATCA GTGGCTTTAA AGCAAAACAA GGATTTGCTA
  ACAAAACATT CTACCCCAGA TGAGTCACGG TTCAGGTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37616457	NES09072328	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		G	A	A		G	A	A	G		A
ss45327711	mCV22346467	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss320447913	CHEV_2_105361993	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27377337					SNP	A	G	G	G	A	G	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616457	NES09072328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105352181 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	45 bp proximal
Rr562248	regulatory region 562248	1344 bp proximal
Rr562249	regulatory region 562249	1373 bp proximal
Rr562250	regulatory region 562250	1551 bp proximal
Rr562251	regulatory region 562251	1826 bp proximal