rs27377330 SNP Detail

Summary

• ID
  rs27377330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105353453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAAGTAAC TTGCTTAAAC CTTGACAGCG ACTAAATGGT
  AAAACTTGAG GTTTGAACCC ACACACACTG GCTCTGGAGT GCATAACCTC ATCATGATGA
  R
  TTTAACCTTG AAAGCTGCCT ACAAGAAGAG GAATTGTGCC TCACAGAAAA GTCAATCCTA
  CTTGATGTTC AAATTGACTT TCAATGTGCA TGTATTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37616450	NES09072291	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A		G		A	A		G
ss45256727	mCV22346499	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				G		A
ss147167804	ENSMUSSNP2539916	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320447919	CHEV_2_105363265	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27377330					SNP	G	G	A	A	A	A	G	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616450	NES09072291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105353453 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	726 bp distal
Rr562248	regulatory region 562248	72 bp proximal
Rr562249	regulatory region 562249	101 bp proximal
Rr562250	regulatory region 562250	279 bp proximal
Rr562251	regulatory region 562251	554 bp proximal