rs27377329 SNP Detail

Summary

• ID
  rs27377329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105353570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTACAAGA AGAGGAATTG TGCCTCACAG AAAAGTCAAT
  CCTACTTGAT GTTCAAATTG ACTTTCAATG TGCATGTATT TGTGTAAAAC ACATGAGTGC
  R
  CACATATGTC CACATTGTAA ACTGAGAGTG AATGCAATTC CCATGCTTGC ACCCTAGCTC
  CTGGAAGCCA GGACAGGCCT TCCCTCTAGC ACAATTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37616449	NES09072292	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		A		G	G		G	G		G
ss45243727	mCV22346500	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				G		A
ss147167809	ENSMUSSNP3279040	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320447920	CHEV_2_105363382	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27377329					SNP	G	G	A	A	A	G	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616449	NES09072292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105353570 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	843 bp distal
Rr562248	regulatory region 562248	within coordinates
Rr562249	regulatory region 562249	within coordinates
Rr562250	regulatory region 562250	162 bp proximal
Rr562251	regulatory region 562251	437 bp proximal