rs27377313 SNP Detail

Summary

• ID
  rs27377313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105355368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAGTCT GAACAGCAAG
  AGGCAGCCAG CTAGTGTGAA GTATGGAAAA AAGGCATCAA ATGAAAAGCA GGTTCCAGCC
  ACAGAGCAGG AGGGCAGCAG CGTTCACCTT CTGTGAAAGA CTGGTGCAGC TGTGTCTTTG
  TAGGAACATA GTCAGTCCCG TTTGTCCCCT TCCTCTCACC ACAGCATTGG TAGGGGACAA
  Y
  AGAAGTAGTC AGGTCTTGGG CCTGACTCAG ATACCTTCCA AGGAAGACAT GATGTTAAAC
  TCATCTTGAC TCCGGTGAGC TGTCAGTCCT GAGGGCAGAC TTGGAAGAAG GCTCTTGCTT
  GTACTCCGGC AGGCTGAGAG ACCGGCGAAG ACCTTTAAAC AGACCCCAGG CTCTGGTGGT
  TGATTCGTCA TATACTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37616432	NES09072211	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27377313					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616432	NES09072211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105355368 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562248	regulatory region 562248	1088 bp distal
Rr562249	regulatory region 562249	1793 bp distal
Rr562250	regulatory region 562250	1615 bp distal
Rr562251	regulatory region 562251	1340 bp distal