rs27328609 SNP Detail

Summary

• ID
  rs27328609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146682188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CCCTTTTTCT ATTTTTACTA
  R
  CTGGATCTTT TAAAATGAAC AAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37498237	NES08928380	PERLEGEN	MM_PANEL2	f	SNP	G			G	G			G		G	G	A
ss45321573	mCV23999492	ABI	CRAMUS_MOUSE	f	SNP	G	G	A			G	G
ss147873710	ENSMUSSNP4833910	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
ss320546145	CHEV_2_146666004	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27328609					SNP	G	G	A	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498237	NES08928380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146682188 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	672 bp upstream
Gm34978	predicted gene, 34978	within coordinates
Rr566735	regulatory region 566735	1473 bp distal
Rr566736	regulatory region 566736	738 bp distal
Rr566737	regulatory region 566737	277 bp distal
Tssr20612	transcription start site region 20612	1267 bp downstream