rs27322894 SNP Detail

Summary

• ID
  rs27322894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156814203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCAGAGT GTCTCTTCCT CCTAGGAACT TACAGAACAG
  CAGAGATGAC TATGGTCTCT AAAATGATAA ATATAAAGAA TAGTCAAGAG TCCTAGGTGG
  R
  AACAATCACT TCTAACCTGT GAGAATTAAG ACAACTTTCA AAAGAGACTG GTGTGCTACA
  AAAGAGACTG GTATACTATA GATGCTTGAC AAATGCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547918	NES08898401	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	A		G	A		A	G	G	A		G
ss148088669	ENSMUSSNP651705	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320583278	CHEV_2_156798019	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322894					SNP	G	G	?	A	G	A	G	A	A	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547918	NES08898401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156814203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1513 bp distal
Rr568396	regulatory region 568396			672 bp proximal
Tssr27078	transcription start site region 27078			1990 bp upstream
Tssr27079	transcription start site region 27079			1865 bp upstream
Tssr27080	transcription start site region 27080			1789 bp upstream
Tssr27081	transcription start site region 27081			1763 bp upstream
Tssr27082	transcription start site region 27082			1710 bp upstream