rs27322893 SNP Detail

Summary

• ID
  rs27322893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156814241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTGAAT TGTGGCCATT
  CAACGCCACT TACTGGAAAG CTCCTGTGCA AAGCACTAGG AAAGATCAGA GTGTCTCTTC
  CTCCTAGGAA CTTACAGAAC AGCAGAGATG ACTATGGTCT CTAAAATGAT AAATATAAAG
  AATAGTCAAG AGTCCTAGGT GGGAACAATC ACTTCTAACC TGTGAGAATT AAGACAACTT
  K
  CAAAAGAGAC TGGTGTGCTA CAAAAGAGAC TGGTATACTA TAGATGCTTG ACAAATGCTG
  GAATTATACC CTGACTAAAC CCACGGTGGA CAGAAATTAT GCTCAAATGA TTTCATAAAT
  CTATTCTAGT AAAGATCATG GCTTACAGTG CAGCACACCG CAGGTATATG CTGCTGTCCC
  CCATGCTTAC GAGGCTGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547917	NES08898402	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T		T	T	T	T	T	T	T
ss45224976	mCV22553871	ABI	CRAMUS_MOUSE	f	SNP		G							T
ss148088674	ENSMUSSNP5272581	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322893					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547917	NES08898402	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156814241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1551 bp distal
Rr568396	regulatory region 568396			634 bp proximal
Tssr27079	transcription start site region 27079			1903 bp upstream
Tssr27080	transcription start site region 27080			1827 bp upstream
Tssr27081	transcription start site region 27081			1801 bp upstream
Tssr27082	transcription start site region 27082			1748 bp upstream