rs27322889 SNP Detail

Summary

• ID
  rs27322889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156815309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGCTCA ACCATCTCCT
  GTTTCTATGA TAAAACAAAA TGAGATGACT GTGCCAGTAT ATACTTAAGA TGCAAACTAA
  AGAAGACTGT CCCCTAGCTG GGCAGACTAA GGAAGGAATG CTAGAGCGGT TCCAGGATTG
  TGAAGGGACG CAGTGAATTC TTTTTTTTTT CCTTAGTTCC TACCATTTTG AGCCCTTCCC
  R
  GTGAGCAGTT TTATAAGATC TATGAGAAAA GGAAGATCAC ATGGTGGAAA ACTCCATCTC
  CAGATCCCTC AGCTGCACAG ACTGGCTCCC TCCTGGGGAT GTGGCCTGCA GTTCCGGCAT
  CTGCTGCCAG GTTCCATCCT GGCACAAAGA GGTACTGATA TTTTTAAAAG GCTGGGAAAG
  CTTTCATAAG CTACAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547913	NES08898345	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G
ss45304628	mCV22553676	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss148088693	ENSMUSSNP2343807	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322889					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547913	NES08898345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156815309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			157 bp distal
Rr568397	regulatory region 568397			1383 bp proximal