rs27322884 SNP Detail

Summary

• ID
  rs27322884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156816243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCCTCTG AGATGAGAGA GTGATCACTG ACAGCATTAA
  TAGAGCTAGA GCTCTATTAG TTCATCCTGC CATCTCCCCA AAAAGAATAC ATCCAGTGTT
  Y
  TTTATATAAT AAACTACATG GATCTTAAAA AAGACTCAAC AGGCCAGATC AACCAGGAGA
  ATATACCAGA CAGAAGAGAG TGAGTCTGAG AGTCACTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37547908	NES08898299	PERLEGEN	MM_PANEL2	f	SNP	T	T	C		C	T	C
ss320583290	CHEV_2_156800059	CHEVERUD	SCREENING_POP	f	SNP				C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27322884					SNP	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547908	NES08898299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156816243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			1091 bp distal
Rr568397	regulatory region 568397			449 bp proximal