rs27322103 SNP Detail

Summary

• ID
  rs27322103
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168010530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGGGTG GGGGGCAGTA
  AGCATGGGGT CCTGGTATTT GACACTTTGG CTTCTGTTGA TGGTCAAACT GGGGATTCAA
  CTCCTGGGAA TTGATCCAGG GCTGTGAGTG GATTGCCAGC AGTTGGCATG GACCCTGGAG
  ACCTCAGCCA GGCCTATGAG AGGGCTGCAG GGTGGTCGAT GCTGGGGTCA GCAAGGCGTT
  K
  ACCTGGGCTT CTTGCTTCTC ATCAGAATAT GGGATTGCAG TGGTTAACCA GGGGCCTCTG
  GGCAGAGGAC ATTCAGGCCT AAACCTAGTT GGCAAGGCAG CCTCCCCCAC CCCTCCATCT
  GGCAGCCATG GCTGGGACCC ACAATGCAGT GCTCTCTAGT CTGGAAGTGG GGGGTGAGGG
  TGGGGCCATC TCTTTAGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37506035	NES08848256	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
ss148267283	ENSMUSSNP6919220	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27322103					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506035	NES08848256	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168010530 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	within coordinates
Rr570912	regulatory region 570912	1151 bp distal
Rr570913	regulatory region 570913	within coordinates
Rr570914	regulatory region 570914	611 bp proximal
Rr570915	regulatory region 570915	1112 bp proximal