rs27277855 SNP Detail

Summary

• ID
  rs27277855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTATTGAT TGGGGATCAC AGGGTCACTC TGAGCTTGTC
  AAGAGCAGGA AGAAGTCCCA CTGAGGGTCT TTAGGATAAA GCACAGCCTC AGCTTCAGAG
  R
  CAGTGCAGTA GAGTTTCATT GAAGCCCAAG AGCCTAGAGC CCAAATGCCT CTCTTGCAGC
  ATTTGAAAAA TGTCCTACCA CATACTTTAA ATCCCCTATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss37481194	NES08947852	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs27277855					SNP	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481194	NES08947852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371611 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr566473	regulatory region 566473			1933 bp distal
Rr566474	regulatory region 566474			1301 bp distal
Tssr20541	transcription start site region 20541			1918 bp downstream
Tssr20542	transcription start site region 20542			1889 bp downstream