rs27255496 SNP Detail

Summary

• ID
  rs27255496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132442157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACATAT ATATGTGTGT
  GTGTATATAT ATATATATAT TTTTTTTTTT TCTAGGCAAG CAGCCTACCG ATTGAGCCAC
  ATCCCTAAAC TTCTATGTGT TTTTAGGCAG GAAGACTGAA AGAAAAGAAC TTTCCCTCTT
  TCTACCTCTA CAGCATACCT GACAATTACA TCATCCCAAA CCAGGAAGAA AACATGGGGA
  Y
  GTTGCCCATA GCGACTGTTT ATTAGTAGGA CATTTAGTCC ATCTCAACTT TTTCTGTGGT
  GACACTTGTA CAGGTTCTAC TTCCCTATTC TTACGACAAG GCCACATTGT CAAAACTCTT
  CCTTCTGGAA TCACTTGGCT CATTAGCTGT AATAGAAACA AAAACAAAGG AGGGGAGGGG
  CATGATGGGA GGGGCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37464716	NES08978877	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27255496					SNP	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464716	NES08978877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132442157 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	within coordinates
Rr565499	regulatory region 565499	1789 bp distal
Rr565500	regulatory region 565500	694 bp distal
Rr565501	regulatory region 565501	within coordinates
Rr565502	regulatory region 565502	1615 bp proximal
Tssr663	transcription start site region 663	712 bp downstream
Tssr20313	transcription start site region 20313	775 bp downstream
Tssr26480	transcription start site region 26480	931 bp downstream