rs27255493 SNP Detail

Summary

• ID
  rs27255493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132443431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTTCA GCTAATTGAA
  TTTACTTTTG TGCTGGGTGA AAGATATGGC TCAGGGAAAT AACCCCAGGG ATTGACAGAT
  AGGATACTCA AAGCTAAAGA GATTCTATAC AACAAAGGAA ACCACCGGCA GAGGGAATGC
  AACCTGCAAA AATAAATTTC GCAAGAAAAT ATGTGGATCT GGATATATTA AGCGCATTAA
  Y
  TTAGGCTCAT AAAGACAGAT ACTGAACATT CTCTCCATGT GGATCCTAGT GTCCAGTTTC
  GTATGTGTGT ATTTATGTCA GAGAAGCAAG ACAGGAGCCG GGGCGGGGGG GGGGGGGGGG
  GCGGGGGGGG CTTTAAGGAA AGGTGATGGG GAGGATAATA GAACACATTT GGAAAGGAGA
  GTACTAGGTG GAAGGGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37464713	NES08978820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27255493					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464713	NES08978820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132443431 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	341 bp upstream
Rr565500	regulatory region 565500	1968 bp distal
Rr565501	regulatory region 565501	921 bp distal
Rr565502	regulatory region 565502	341 bp proximal
Tssr663	transcription start site region 663	1986 bp downstream
Tssr26480	transcription start site region 26480	340 bp upstream