rs27255489 SNP Detail

Summary

• ID
  rs27255489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132444119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGGAAG TAAAATGTTT
  TCCAAACACA CCCTGTAATT TGCAAAGTTA CCTCTTTCCA AAGAATATAG AATTTCACCT
  ATTACATAAA GAGTGTTCTT TCCTTGATCC AACTTTCCCT TCCTGGATTA GTTTATATTT
  CCCAGACTTC AGGAACATGA AAGAGGTCTG TAATCAAACT GCCCTGTTTC TTCACAACTG
  M
  TTTCAGCAGC ATAAAGGAGA GCCAGCCGAA GCTGCTCTTT GAATGGCACG ATACAGACTG
  CTCTAAATGA CCAAAATAAA CTAAAAAAAA TACATGCATG TGTGCATGTG TATATGTGTG
  TGCATGTGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGAAGGCTA CATATCTTGT
  ATACATTCTG TTTCCTGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37464709	NES08978793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27255489					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464709	NES08978793	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132444119 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	1029 bp upstream
Rr565501	regulatory region 565501	1609 bp distal
Rr565502	regulatory region 565502	within coordinates
Tssr26480	transcription start site region 26480	1028 bp upstream