rs27255488 SNP Detail

Summary

• ID
  rs27255488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132444158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAAAGTT ACCTCTTTCC
  AAAGAATATA GAATTTCACC TATTACATAA AGAGTGTTCT TTCCTTGATC CAACTTTCCC
  TTCCTGGATT AGTTTATATT TCCCAGACTT CAGGAACATG AAAGAGGTCT GTAATCAAAC
  TGCCCTGTTT CTTCACAACT GCTTTCAGCA GCATAAAGGA GAGCCAGCCG AAGCTGCTCT
  Y
  TGAATGGCAC GATACAGACT GCTCTAAATG ACCAAAATAA ACTAAAAAAA ATACATGCAT
  GTGTGCATGT GTATATGTGT GTGCATGTGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGAAGGCT ACATATCTTG TATACATTCT GTTTCCTGCT TTCTGGAAAC AAAAATCTTA
  AGGCTTAAAG CTGGATTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37464708	NES08978796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C		T	T	T
ss147621248	ENSMUSSNP503366	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27255488					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464708	NES08978796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132444158 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	1068 bp upstream
Rr565501	regulatory region 565501	1648 bp distal
Rr565502	regulatory region 565502	within coordinates
Tssr26480	transcription start site region 26480	1067 bp upstream