rs27245016 SNP Detail

Summary

• ID
  rs27245016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145653173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTTGTTT CCTAGGCTTT GTGTTTCCCC AAGGGTGCCT
  GTGCACTACG CACATTTCCC CTTGCTCAGG CTTCTGGTTC AGCCACAACA GGATGCCTCC
  Y
  AAGACCCCAG GTCACGCCCA CAGAAATGAA GGCACTGGAT TGGGGAACCC AGAGGCAGGG
  CAGATTTGGT AAATCCCAGG ATGCTAGTCC CCCCTGCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37476436	NES08990953	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	C	T	C	C	T	C	C
ss147846568	ENSMUSSNP1147310	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27245016					SNP	T	C	T	C	T	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37476436	NES08990953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145653173 () rs orientation: forward

Symbol	Name	Function Class
Rin2	Ras and Rab interactor 2	Intron
Rr566581	regulatory region 566581	315 bp distal
Rr566582	regulatory region 566582	390 bp distal